A COMPREHENSIVE ANALYSIS OF GENOME COMPOSITION AND CODON USAGE PATTERNS OF EMERGING CORONAVIRUSES
Identifieur interne : 000A52 ( 2020/Analysis ); précédent : 000A51; suivant : 000A53A COMPREHENSIVE ANALYSIS OF GENOME COMPOSITION AND CODON USAGE PATTERNS OF EMERGING CORONAVIRUSES
Auteurs : Fernando L. Tort [Uruguay] ; Matías Castells [Uruguay] ; Juan Cristina [Uruguay]Source :
- Virus Research [ 0168-1702 ] ; 2020.
Abstract
A comprehensive genome and codon usage analysis of SARS-CoV-2 was performed. SARS-CoV-2 has a distinct genome composition in relation to other βCoV strains. The overall codon usage in SARS-CoV-2 is slightly biased. Most of the highly frequent codons are A- and U-ending codons. Different codon preferences in SARS-CoV-2 genes in relation to human ones were found. These differences are due to codon usage preferences.
Url:
DOI: 10.1016/j.virusres.2020.197976
PubMed: NONE
PubMed Central: 7152894
Affiliations:
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PMC:7152894Le document en format XML
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Tort</name><affiliation wicri:level="1"><nlm:aff id="aff0005">Laboratorio de Virología Molecular, Sede Salto, Centro Universitario Regional, Litoral Norte, Universidad de la República, Gral. Rivera 1350, 50000, Salto, Uruguay</nlm:aff><country xml:lang="fr">Uruguay</country><wicri:regionArea>Laboratorio de Virología Molecular, Sede Salto, Centro Universitario Regional, Litoral Norte, Universidad de la República, Gral. Rivera 1350, 50000, Salto</wicri:regionArea><wicri:noRegion>Salto</wicri:noRegion></affiliation></author><author><name sortKey="Castells, Matias" sort="Castells, Matias" uniqKey="Castells M" first="Matías" last="Castells">Matías Castells</name><affiliation wicri:level="1"><nlm:aff id="aff0005">Laboratorio de Virología Molecular, Sede Salto, Centro Universitario Regional, Litoral Norte, Universidad de la República, Gral. Rivera 1350, 50000, Salto, Uruguay</nlm:aff><country xml:lang="fr">Uruguay</country><wicri:regionArea>Laboratorio de Virología Molecular, Sede Salto, Centro Universitario Regional, Litoral Norte, Universidad de la República, Gral. Rivera 1350, 50000, Salto</wicri:regionArea><wicri:noRegion>Salto</wicri:noRegion></affiliation></author><author><name sortKey="Cristina, Juan" sort="Cristina, Juan" uniqKey="Cristina J" first="Juan" last="Cristina">Juan Cristina</name><affiliation wicri:level="1"><nlm:aff id="aff0010">Laboratorio de Virología Molecular, Centro de Investigaciones Nucleares, Facultad de Ciencias, Universidad de la República, Iguá 4225, Montevideo, 11400, Uruguay</nlm:aff><country xml:lang="fr">Uruguay</country><wicri:regionArea>Laboratorio de Virología Molecular, Centro de Investigaciones Nucleares, Facultad de Ciencias, Universidad de la República, Iguá 4225, Montevideo, 11400</wicri:regionArea><wicri:noRegion>11400</wicri:noRegion></affiliation></author></analytic><series><title level="j">Virus Research</title><idno type="ISSN">0168-1702</idno><idno type="eISSN">1872-7492</idno><imprint><date when="2020">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Highlights</title><p><list list-type="simple" id="lis0005"><list-item id="lsti0005"><label>•</label><p id="par0005">A comprehensive genome and codon usage analysis of SARS-CoV-2 was performed.</p></list-item><list-item id="lsti0010"><label>•</label><p id="par0010">SARS-CoV-2 has a distinct genome composition in relation to other βCoV strains.</p></list-item><list-item id="lsti0015"><label>•</label><p id="par0015">The overall codon usage in SARS-CoV-2 is slightly biased.</p></list-item><list-item id="lsti0020"><label>•</label><p id="par0020">Most of the highly frequent codons are A- and U-ending codons.</p></list-item><list-item id="lsti0025"><label>•</label><p id="par0025">Different codon preferences in SARS-CoV-2 genes in relation to human ones were found.</p></list-item><list-item id="lsti0030"><label>•</label><p id="par0030">These differences are due to codon usage preferences.</p></list-item></list></p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Alnazawi, M" uniqKey="Alnazawi M">M. 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